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Pre-training genomic language models using AWS HealthOmics and Amazon SageMaker

AWS Machine Learning

Here, we use AWS HealthOmics storage as a convenient and cost-effective omic data store and Amazon Sagemaker as a fully managed machine learning (ML) service to train and deploy the model. All of this is delivered by HealthOmics, removing the burden of managing compression, tiering, metadata, and file organization from customers.

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Accelerate protein structure prediction with the ESMFold language model on Amazon SageMaker

AWS Machine Learning

In addition to basic research, algorithms like AlphaFold and ESMFold have many applications in medicine and biotechnology. He has more than 17 years’ experience in biotechnology and machine learning, and is passionate about helping customers solve genomic and proteomic challenges. A score of 1.0 indicates a perfect match.

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Efficiently fine-tune the ESM-2 protein language model with Amazon SageMaker

AWS Machine Learning

save_to_disk(test_s3_uri) Create a training script SageMaker script mode allows you to run your custom training code in optimized machine learning (ML) framework containers managed by AWS. We filter for high-quality sequences between 100–512 amino acids: df = pd.read_csv( "[link] ).drop(["Unnamed: apply(lambda x: len(x)).between(100,

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